addStatistics

Source: R/auxiliary_giotto.R

adds genes and cells statistics to the giotto object

addStatistics(
  gobject,
  expression_values = c("normalized", "scaled", "custom"),
  detection_threshold = 0,
  return_gobject = TRUE
)

Arguments

gobject

giotto object
expression_values

expression values to use
detection_threshold

detection threshold to consider a gene detected
return_gobject

boolean: return giotto object (default = TRUE)

Value

giotto object if return_gobject = TRUE, else a list with results

Details

See addGeneStatistics and addCellStatistics

Examples


data(mini_giotto_single_cell)

updated_giotto_object = addStatistics(mini_giotto_single_cell)

#> 
#>  gene statistics has already been applied once, will be overwritten 
#> 
#>  cells statistics has already been applied once, will be overwritten