createGiottoInstructions

Source: R/giotto.R

Function to set global instructions for giotto functions

createGiottoInstructions(
  python_path = NULL,
  show_plot = NULL,
  return_plot = NULL,
  save_plot = NULL,
  save_dir = NULL,
  plot_format = NULL,
  dpi = NULL,
  units = NULL,
  height = NULL,
  width = NULL,
  is_docker = FALSE
)

Arguments

python_path

path to python binary to use
show_plot

print plot to console, default = TRUE
return_plot

return plot as object, default = TRUE
save_plot

automatically save plot, dafault = FALSE
save_dir

path to directory where to save plots
plot_format

format of plots (defaults to png)
dpi

resolution for raster images
units

units of format (defaults to in)
height

height of plots
width

width of plots
is_docker

using docker implementation of Giotto (defaults to FALSE)

Value

named vector with giotto instructions

See also

More online information can be found here https://rubd.github.io/Giotto_site/articles/instructions_and_plotting.html