Visualize cells and gene expression in a virtual cross section according to spatial coordinates
crossSectionGenePlot3D( gobject, crossSection_obj = NULL, name = NULL, spatial_network_name = "Delaunay_network", other_cell_color = alpha("lightgrey", 0), default_save_name = "crossSectionGenePlot3D", ... )
| gobject | giotto object |
|---|---|
| crossSection_obj | cross section object as alternative input. default = NULL. |
| name | name of virtual cross section to use |
| spatial_network_name | name of spatial network to use |
| other_cell_color | color of cells outside the cross section. default = transparent. |
| default_save_name | default save name for saving, don't change, change save_name in save_param |
| ... | parameters for spatGenePlot3D |
ggplot
Description of parameters.