Create visualization for combined (pairwise) ICG scores
plotCombineICG( gobject, combCpgObject, selected_interactions = NULL, selected_gene_to_gene = NULL, detail_plot = T, simple_plot = F, simple_plot_facet = c("interaction", "genes"), facet_scales = "fixed", facet_ncol = length(selected_gene_to_gene), facet_nrow = length(selected_interactions), colors = c("#9932CC", "#FF8C00"), show_plot = NA, return_plot = NA, save_plot = NA, save_param = list(), default_save_name = "plotCombineICG" )
| gobject | giotto object |
|---|---|
| combCpgObject | ICGscores, output from combineInteractionChangedGenes() |
| selected_interactions | interactions to show |
| selected_gene_to_gene | pairwise gene combinations to show |
| detail_plot | show detailed info in both interacting cell types |
| simple_plot | show a simplified plot |
| simple_plot_facet | facet on interactions or genes with simple plot |
| facet_scales | ggplot facet scales paramter |
| facet_ncol | ggplot facet ncol parameter |
| facet_nrow | ggplot facet nrow parameter |
| colors | vector with two colors to use |
| show_plot | show plots |
| return_plot | return plotting object |
| save_plot | directly save the plot [boolean] |
| save_param | list of saving parameters from |
| default_save_name | default save name for saving, don't change, change save_name in save_param |
ggplot