runDWLSDeconv

Source: R/spatial_enrichment.R

Function to perform DWLS deconvolution based on single cell expression data

runDWLSDeconv(
  gobject,
  expression_values = c("normalized"),
  logbase = 2,
  cluster_column = "leiden_clus",
  sign_matrix,
  n_cell = 50,
  cutoff = 2,
  name = NULL,
  return_gobject = TRUE
)

Arguments

gobject

giotto object
expression_values

expression values to use
logbase

base used for log normalization
cluster_column

name of cluster column
sign_matrix

sig matrix for deconvolution
n_cell

number of cells per spot
cutoff

cut off (default = 2)
name

name to give to spatial deconvolution results, default = DWLS
return_gobject

return giotto object

Value

giotto object or deconvolution results