showProcessingSteps

shows the sequential processing steps that were performed on a Giotto object in a summarized format

showProcessingSteps(gobject)

Arguments

gobject	giotto object

Value

list of processing steps and names

Examples

data(mini_giotto_single_cell)

showProcessingSteps(mini_giotto_single_cell)
#> Processing steps: 
#>  
#> 
#>  0_subset 
#> 
#>  1_filter 
#> 
#>  2_normalize 
#> 
#>  3_gene_stats 
#> 
#>  4_cell_stats 
#> 
#>  5_hvg 
#> 	 name info:  hvg 
#> 
#>  6_pca 
#> 	 name info:  pca 
#> 
#>  7_umap 
#> 	 name info:  pca umap 
#> 
#>  8_tsne 
#> 	 name info:  pca tsne 
#> 
#>  9_nn_network 
#> 	 name info:  pca sNN.pca 
#> 
#>  10_cluster 
#> 	 name info:  sNN.pca leiden_clus 
#> 
#>  11_grid 
#> 	 name info:  spatial_grid 
#> 
#>  12_delaunay_spatial_network 
#> 	 name info:  Delaunay_network 
#> 
#>  13_spatial_network 
#> 	 name info:  kNN_network 
#> 
#>  14_create_metagene 
#> 	 name info:  cluster_metagene