showSpatialCorGenes

Source: R/spatial_genes.R

Shows and filters spatially correlated genes

showSpatialCorGenes(
  spatCorObject,
  use_clus_name = NULL,
  selected_clusters = NULL,
  genes = NULL,
  min_spat_cor = 0.5,
  min_expr_cor = NULL,
  min_cor_diff = NULL,
  min_rank_diff = NULL,
  show_top_genes = NULL
)

Arguments

spatCorObject

spatial correlation object
use_clus_name

cluster information to show
selected_clusters

subset of clusters to show
genes

subset of genes to show
min_spat_cor

filter on minimum spatial correlation
min_expr_cor

filter on minimum single-cell expression correlation
min_cor_diff

filter on minimum correlation difference (spatial vs expression)
min_rank_diff

filter on minimum correlation rank difference (spatial vs expression)
show_top_genes

show top genes per gene

Value

data.table with filtered information