spatialAEH

Source: R/spatial_genes.R

Compute spatial variable genes with spatialDE method

spatialAEH(
  gobject = NULL,
  SpatialDE_results = NULL,
  name_pattern = "AEH_patterns",
  expression_values = c("raw", "normalized", "scaled", "custom"),
  pattern_num = 6,
  l = 1.05,
  python_path = NULL,
  return_gobject = TRUE
)

Arguments

gobject

Giotto object
SpatialDE_results

results of spatialDE function
name_pattern

name for the computed spatial patterns
expression_values

gene expression values to use
pattern_num

number of spatial patterns to look for
l

lengthscale
python_path

specify specific path to python if required
return_gobject

show plot

Value

An updated giotto object

Details

This function is a wrapper for the SpatialAEH method implemented in the ...