trendSceek

Source: R/spatial_genes.R

Compute spatial variable genes with trendsceek method

trendSceek(
  gobject,
  expression_values = c("normalized", "raw"),
  subset_genes = NULL,
  nrand = 100,
  ncores = 8,
  ...
)

Arguments

gobject

Giotto object
expression_values

gene expression values to use
subset_genes

subset of genes to run trendsceek on
nrand

An integer specifying the number of random resamplings of the mark distribution as to create the null-distribution.
ncores

An integer specifying the number of cores to be used by BiocParallel
...

Additional parameters to the trendsceek_test function

Value

data.frame with trendsceek spatial genes results

Details

This function is a wrapper for the trendsceek_test method implemented in the trendsceek package