Plots dotplot to compare ligand-receptor rankings from spatial and expression information
plotRankSpatvsExpr( gobject, combCC, expr_rnk_column = "LR_expr_rnk", spat_rnk_column = "LR_spat_rnk", midpoint = 10, size_range = c(0.01, 1.5), xlims = NULL, ylims = NULL, selected_ranks = c(1, 10, 20), show_plot = NA, return_plot = NA, save_plot = NA, save_param = list(), default_save_name = "plotRankSpatvsExpr" )
| gobject | giotto object |
|---|---|
| combCC | combined communinication scores from |
| expr_rnk_column | column with expression rank information to use |
| spat_rnk_column | column with spatial rank information to use |
| midpoint | midpoint of colors |
| size_range | size ranges of dotplot |
| xlims | x-limits, numerical vector of 2 |
| ylims | y-limits, numerical vector of 2 |
| selected_ranks | numerical vector, will be used to print out the percentage of top spatial ranks are recovered |
| show_plot | show plots |
| return_plot | return plotting object |
| save_plot | directly save the plot [boolean] |
| save_param | list of saving parameters from |
| default_save_name | default save name for saving, don't change, change save_name in save_param |
ggplot