Plots recovery plot to compare ligand-receptor rankings from spatial and expression information
plotRecovery( gobject, combCC, expr_rnk_column = "exprPI_rnk", spat_rnk_column = "spatPI_rnk", ground_truth = c("spatial", "expression"), show_plot = NA, return_plot = NA, save_plot = NA, save_param = list(), default_save_name = "plotRecovery" )
| gobject | giotto object |
|---|---|
| combCC | combined communinication scores from |
| expr_rnk_column | column with expression rank information to use |
| spat_rnk_column | column with spatial rank information to use |
| ground_truth | what to consider as ground truth (default: spatial) |
| show_plot | show plots |
| return_plot | return plotting object |
| save_plot | directly save the plot [boolean] |
| save_param | list of saving parameters from |
| default_save_name | default save name for saving, don't change, change save_name in save_param |
ggplot