rankSpatialCorGroups

Source: R/spatial_genes.R

Rank spatial correlated clusters according to correlation structure

rankSpatialCorGroups(
  gobject,
  spatCorObject,
  use_clus_name = NULL,
  show_plot = NA,
  return_plot = FALSE,
  save_plot = NA,
  save_param = list(),
  default_save_name = "rankSpatialCorGroups"
)

Arguments

gobject

giotto object
spatCorObject

spatial correlation object
use_clus_name

name of clusters to visualize (from clusterSpatialCorGenes())
show_plot

show plot
return_plot

return ggplot object
save_plot

directly save the plot [boolean]
save_param

list of saving parameters, see showSaveParameters
default_save_name

default save name for saving, don't change, change save_name in save_param

Value

data.table with positive (within group) and negative (outside group) scores