addStatistics

adds genes and cells statistics to the giotto object

addStatistics(
  gobject,
  expression_values = c("normalized", "scaled", "custom"),
  detection_threshold = 0,
  return_gobject = TRUE
)

Arguments

gobject

giotto object

expression_values

expression values to use

detection_threshold

detection threshold to consider a gene detected

return_gobject

boolean: return giotto object (default = TRUE)

Value

giotto object if return_gobject = TRUE, else a list with results

Details

See addGeneStatistics and addCellStatistics

Examples

data(mini_giotto_single_cell)

updated_giotto_object = addStatistics(mini_giotto_single_cell)