addStatistics — addStatistics • Giotto

adds genes and cells statistics to the giotto object

addStatistics(
  gobject,
  expression_values = c("normalized", "scaled", "custom"),
  detection_threshold = 0,
  return_gobject = TRUE
)

Arguments

gobject: giotto object
expression_values: expression values to use
detection_threshold: detection threshold to consider a gene detected
return_gobject: boolean: return giotto object (default = TRUE)

Value

giotto object if return_gobject = TRUE, else a list with results

Details

See addGeneStatistics and addCellStatistics

Examples


data(mini_giotto_single_cell)
#> Warning: data set ‘mini_giotto_single_cell’ not found

updated_giotto_object = addStatistics(mini_giotto_single_cell)
#> Warning: restarting interrupted promise evaluation
#> Warning: restarting interrupted promise evaluation
#> Error: object 'mini_giotto_single_cell' not found