cellProximityEnrichmentEachSpot

Compute cell-cell interaction enrichment for each spot with its interacted spots (observed)

cellProximityEnrichmentEachSpot(
  gobject,
  spatial_network_name = "spatial_network",
  cluster_column = "cell_ID"
)

Arguments

gobject

giotto object

spatial_network_name

name of spatial network to use

cluster_column

name of column to use for clusters

feat_type

feature type

Value

matrix that rownames are cell-cell interaction pairs and colnames are cell_IDs