Create heatmap from cell-cell proximity scores
cellProximityHeatmap(
gobject,
CPscore,
scale = T,
order_cell_types = T,
color_breaks = NULL,
color_names = NULL,
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "cellProximityHeatmap"
)
giotto object
CPscore, output from cellProximityEnrichment()
scale cell-cell proximity interaction scores
order cell types based on enrichment correlation
numerical vector of length 3 to represent min, mean and maximum
character color vector of length 3
show plot
return ggplot object
directly save the plot [boolean]
list of saving parameters from all_plots_save_function
default save name for saving, don't change, change save_name in save_param
ggplot heatmap
This function creates a heatmap that shows the spatial proximity enrichment or depletion of cell type pairs.