combCCcom — combCCcom • Giotto

Combine spatial and expression based cell-cell communication data.tables

combCCcom(
  spatialCC,
  exprCC,
  min_lig_nr = 3,
  min_rec_nr = 3,
  min_padj_value = 1,
  min_log2fc = 0,
  min_av_diff = 0,
  detailed = FALSE
)

Arguments

spatialCC: spatial cell-cell communication scores
exprCC: expression cell-cell communication scores
min_lig_nr: minimum number of ligand cells
min_rec_nr: minimum number of receptor cells
min_padj_value: minimum adjusted p-value
min_log2fc: minimum log2 fold-change
min_av_diff: minimum average expression difference
detailed: detailed option used with spatCellCellcom (default = FALSE)

Value

combined data.table with spatial and expression communication data