combineCellProximityGenes

Combine ICG scores in a pairwise manner.

combineCellProximityGenes(...)

Arguments

...

Arguments passed on to combineInteractionChangedGenes

cpgObject: ICG (interaction changed gene) score object
selected_ints: subset of selected cell-cell interactions (optional)
selected_genes: subset of selected genes (optional)
specific_genes_1: specific geneset combo (need to position match specific_genes_2)
specific_genes_2: specific geneset combo (need to position match specific_genes_1)
min_cells: minimum number of target cell type
min_int_cells: minimum number of interacting cell type
min_fdr: minimum adjusted p-value
min_spat_diff: minimum absolute spatial expression difference
min_log2_fc: minimum absolute log2 fold-change
do_parallel: run calculations in parallel with mclapply
cores: number of cores to use if do_parallel = TRUE
verbose: verbose