createGiottoImage

Creates a giotto image that can be added to a Giotto object and/or used to add an image to the spatial plotting functions

createGiottoImage(
  gobject = NULL,
  spatial_locs = NULL,
  mg_object,
  name = "image",
  do_manual_adj = TRUE,
  xmax_adj = NULL,
  xmin_adj = NULL,
  ymax_adj = NULL,
  ymin_adj = NULL,
  scale_factor = 1
)

Arguments

gobject

giotto object

spatial_locs

spatial locations (alternative if giobject = NULL)

mg_object

magick image object

name

name for the image

do_manual_adj

flag to use manual adj values instead of automatic alignment when given a gobject or spatlocs

xmax_adj

adjustment of the maximum x-value to align the image

xmin_adj

adjustment of the minimum x-value to align the image

ymax_adj

adjustment of the maximum y-value to align the image

ymin_adj

adjustment of the minimum y-value to align the image

scale_factor

scaling of image dimensions relative to spatial coordinates

Value

a giotto image object