Visualize cells in a virtual cross section according to spatial coordinates
crossSectionPlot3D(
gobject,
crossSection_obj = NULL,
name = NULL,
spatial_network_name = "Delaunay_network",
show_other_cells = T,
other_cell_color = alpha("lightgrey", 0),
default_save_name = "crossSection3D",
...
)giotto object
cross section object as alternative input. default = NULL.
name of virtual cross section to use
name of spatial network to use
display not selected cells
color of cells outside the cross section. default = transparent.
default save name for saving, don't change, change save_name in save_param
parameters for spatPlot3D
ggplot
Description of parameters.