cluster cells using a NN-network and the Louvain algorithm from the multinet package in R.
doLouvainCluster_multinet(
gobject,
name = "louvain_clus",
nn_network_to_use = "sNN",
network_name = "sNN.pca",
gamma = 1,
omega = 1,
return_gobject = TRUE,
set_seed = F,
seed_number = 1234
)
giotto object
name for cluster
type of NN network to use (kNN vs sNN)
name of NN network to use
Resolution parameter for modularity in the generalized louvain method.
Inter-layer weight parameter in the generalized louvain method.
boolean: return giotto object (default = TRUE)
set seed
number for seed
giotto object with new clusters appended to cell metadata
See glouvain_ml
from the multinet package in R for
more information.