Create heatmap of spatially correlated genes
heatmSpatialCorGenes(
gobject,
spatCorObject,
use_clus_name = NULL,
show_cluster_annot = TRUE,
show_row_dend = T,
show_column_dend = F,
show_row_names = F,
show_column_names = F,
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "heatmSpatialCorGenes",
...
)giotto object
spatial correlation object
name of clusters to visualize (from clusterSpatialCorGenes())
show cluster annotation on top of heatmap
show row dendrogram
show column dendrogram
show row names
show column names
show plot
return ggplot object
directly save the plot [boolean]
list of saving parameters, see showSaveParameters
default save name for saving, don't change, change save_name in save_param
additional parameters to the Heatmap function from ComplexHeatmap
Heatmap generated by ComplexHeatmap