Installs a giotto environment
installGiottoEnvironment(
packages_to_install = c("pandas==1.1.5", "networkx==2.6.3", "python-igraph==0.9.6",
"leidenalg==0.8.7", "python-louvain==0.15", "python.app==2", "scikit-learn==0.24.2"),
force_miniconda = FALSE,
force_environment = FALSE,
verbose = TRUE
)
all python modules (packages) that should be installed for Giotto to work
force reinstallation of miniconda
force reinstallation of the giotto environment
be verbose
installs a giotto environment using the reticulate miniconda system
This function will install a local giotto environment using
the miniconda system as implemented by reticulate. Once this giotto environment is
installed it will be automatically detected when you run the Giotto toolbox. If you want to use
your own python path then you can set the python_path in the createGiottoInstructions
and provide the instructions to the createGiottoObject
function.