Plots dotplot for ligand-receptor communication scores in cell-cell interactions
plotCCcomDotplot(
gobject,
comScores,
selected_LR = NULL,
selected_cell_LR = NULL,
show_LR_names = TRUE,
show_cell_LR_names = TRUE,
cluster_on = c("PI", "LR_expr", "log2fc"),
cor_method = c("pearson", "kendall", "spearman"),
aggl_method = c("ward.D", "ward.D2", "single", "complete", "average", "mcquitty",
"median", "centroid"),
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "plotCCcomDotplot"
)
giotto object
communinication scores from exprCellCellcom
or spatCellCellcom
selected ligand-receptor combinations
selected cell-cell combinations for ligand-receptor combinations
show ligand-receptor names
show cell-cell names
values to use for clustering of cell-cell and ligand-receptor pairs
correlation method used for clustering
agglomeration method used by hclust
show plots
return plotting object
directly save the plot [boolean]
list of saving parameters from all_plots_save_function
default save name for saving, don't change, change save_name in save_param
ggplot