plotICG — plotICG • Giotto

Create barplot to visualize interaction changed genes

plotICG(
  gobject,
  cpgObject,
  source_type,
  source_markers,
  ICG_genes,
  cell_color_code = NULL,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotICG"
)

Arguments

gobject: giotto object
cpgObject: ICG (interaction changed gene) score object
source_type: cell type of the source cell
source_markers: markers for the source cell type
ICG_genes: named character vector of ICG genes
cell_color_code: cell color code for the interacting cell types
show_plot: show plots
return_plot: return plotting object
save_plot: directly save the plot [boolean]
save_param: list of saving parameters from all_plots_save_function
default_save_name: default save name for saving, don't change, change save_name in save_param

Value

plot