plotInteractionChangedGenes

Create barplot to visualize interaction changed genes

plotInteractionChangedGenes(
  gobject,
  cpgObject,
  source_type,
  source_markers,
  ICG_genes,
  cell_color_code = NULL,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotInteractionChangedGenes"
)

Arguments

gobject

giotto object

cpgObject

ICG (interaction changed gene) score object

source_type

cell type of the source cell

source_markers

markers for the source cell type

ICG_genes

named character vector of ICG genes

cell_color_code

cell color code for the interacting cell types

show_plot

show plots

return_plot

return plotting object

save_plot

directly save the plot [boolean]

save_param

list of saving parameters from all_plots_save_function

default_save_name

default save name for saving, don't change, change save_name in save_param

Value

plot