Creates heatmap for numeric cell metadata within aggregated clusters.
plotMetaDataCellsHeatmap(
gobject,
metadata_cols = NULL,
spat_enr_names = NULL,
value_cols = NULL,
first_meta_col = NULL,
second_meta_col = NULL,
show_values = c("zscores", "original", "zscores_rescaled"),
custom_cluster_order = NULL,
clus_cor_method = "pearson",
clus_cluster_method = "complete",
custom_values_order = NULL,
values_cor_method = "pearson",
values_cluster_method = "complete",
midpoint = 0,
x_text_size = 8,
x_text_angle = 45,
y_text_size = 8,
strip_text_size = 8,
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "plotMetaDataCellsHeatmap"
)giotto object
annotation columns found in pDataDT(gobject)
spatial enrichment results to include
value columns to use
if more than 1 metadata column, select the x-axis factor
if more than 1 metadata column, select the facetting factor
which values to show on heatmap
custom cluster order (default = NULL)
correlation method for clusters
hierarchical cluster method for the clusters
custom values order (default = NULL)
correlation method for values
hierarchical cluster method for the values
midpoint of show_values
size of x-axis text
angle of x-axis text
size of y-axis text
size of strip text
show plot
return ggplot object
directly save the plot [boolean]
list of saving parameters, see showSaveParameters
default save name for saving, don't change, change save_name in save_param
ggplot or data.table
Creates heatmap for the average values of selected value columns in the different annotation groups.
plotMetaDataHeatmap for gene expression instead of numeric cell annotation data.