Shows and filters spatially correlated genes
showSpatialCorGenes(
spatCorObject,
use_clus_name = NULL,
selected_clusters = NULL,
genes = NULL,
min_spat_cor = 0.5,
min_expr_cor = NULL,
min_cor_diff = NULL,
min_rank_diff = NULL,
show_top_genes = NULL
)
spatial correlation object
cluster information to show
subset of clusters to show
subset of genes to show
filter on minimum spatial correlation
filter on minimum single-cell expression correlation
filter on minimum correlation difference (spatial vs expression)
filter on minimum correlation rank difference (spatial vs expression)
show top genes per gene
data.table with filtered information