subsetGiotto

subsets Giotto object including previous analyses.

subsetGiotto(gobject, cell_ids = NULL, gene_ids = NULL, verbose = FALSE)

Arguments

gobject

giotto object

cell_ids

cell IDs to keep

gene_ids

gene IDs to keep

verbose

be verbose

Value

giotto object

Examples

# \donttest{

data(mini_giotto_single_cell)
#> Warning: data set ‘mini_giotto_single_cell’ not found

random_cells = sample(slot(mini_giotto_single_cell, 'cell_ID'), 10)
#> Error: object 'mini_giotto_single_cell' not found
random_genes = sample(slot(mini_giotto_single_cell, 'gene_ID'), 10)
#> Error: object 'mini_giotto_single_cell' not found

subset_obj = subsetGiotto(mini_giotto_single_cell,
                         cell_ids = random_cells,
                         gene_ids = random_genes)
#> Error in subsetGiotto(mini_giotto_single_cell, cell_ids = random_cells,     gene_ids = random_genes): unused argument (gene_ids = random_genes)

# }