subsetGiottoLocs

Source: R/auxiliary_giotto.R

subsets Giotto object based on spatial locations

subsetGiottoLocs(
  gobject,
  x_max = NULL,
  x_min = NULL,
  y_max = NULL,
  y_min = NULL,
  z_max = NULL,
  z_min = NULL,
  return_gobject = T,
  verbose = FALSE
)

Arguments

gobject

giotto object

x_max

maximum x-coordinate

x_min

minimum x-coordinate

y_max

maximum y-coordinate

y_min

minimum y-coordinate

z_max

maximum z-coordinate

z_min

minimum z-coordinate

return_gobject

return Giotto object

verbose

be verbose

Value

giotto object

Details

if return_gobject = FALSE, then a filtered combined metadata data.table will be returned

Examples

# \donttest{

data(mini_giotto_single_cell)
#> Warning: data set ‘mini_giotto_single_cell’ not found

# spatial plot
spatPlot(mini_giotto_single_cell)
#> Error: object 'mini_giotto_single_cell' not found

# subset giotto object based on spatial locations
subset_obj = subsetGiottoLocs(mini_giotto_single_cell,
x_max = 1500, x_min = 1000,
y_max = -500, y_min = -1000)
#> Error: object 'mini_giotto_single_cell' not found

# spatial plot of subset giotto object
spatPlot(subset_obj)
#> Error: object 'subset_obj' not found

# }