trendSceek — trendSceek • Giotto

Compute spatial variable genes with trendsceek method

trendSceek(
  gobject,
  expression_values = c("normalized", "raw"),
  subset_genes = NULL,
  nrand = 100,
  ncores = 8,
  ...
)

Arguments

gobject: Giotto object
expression_values: gene expression values to use
subset_genes: subset of genes to run trendsceek on
nrand: An integer specifying the number of random resamplings of the mark distribution as to create the null-distribution.
ncores: An integer specifying the number of cores to be used by BiocParallel
...: Additional parameters to the trendsceek_test function

data.frame with trendsceek spatial genes results

This function is a wrapper for the trendsceek_test method implemented in the trendsceek package