plotRecovery — plotRecovery • Giotto

Plots recovery plot to compare ligand-receptor rankings from spatial and expression information

plotRecovery(
  gobject,
  combCC,
  expr_rnk_column = "exprPI_rnk",
  spat_rnk_column = "spatPI_rnk",
  ground_truth = c("spatial", "expression"),
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotRecovery"
)

Arguments

gobject: giotto object
combCC: combined communinication scores from combCCcom
expr_rnk_column: column with expression rank information to use
spat_rnk_column: column with spatial rank information to use
ground_truth: what to consider as ground truth (default: spatial)
show_plot: show plots
return_plot: return plotting object
save_plot: directly save the plot [boolean]
save_param: list of saving parameters from all_plots_save_function
default_save_name: default save name for saving, don't change, change save_name in save_param

Value

ggplot